TREND
TRee-based Exploration of Neighborhoods and Domains
news

News

2024, October

TREND databases have been updated to the latest versions:

  • Pfam models v37.1
  • CDD models v3.21:
    • 62456 models in the default search set and indexed in Entrez
    • 19638 models from Pfam v35
    • 5137 models from COG v2
    • 1009 models from SMART v6.0
    • 12282 models from the Protein Clusters/NCBIFAM database
    • 4488 models from the TIGRFAM v14.0 database
    • 2142 models from the NCBIFAM database
    • 19902 models curated by NCBI/CDD
    • 4705 multi-model superfamilies indexed in Entrez
  • MiST v4.0:
    • Gene neighborhoods for 202,000+ genomes and 10,000+ MAGs are available

TREND can now display gene neighborhoods of both genomes and metagenome-assembled genomes (MAGs) available in the MiST database.